Resources ========= We provide the following resources for download: Single-cell data ---------------- A list of example single-cell perturbation datasets: - `Norman-2019.h5ad `_ - Check back for more Scaffold graphs --------------- A list of pre-built human gene scaffold graphs: - KEGG pathways: `inferred_kegg_gene_only.gml.gz `_ - TF-target predictions: `TF-targets.gml.gz `_ - BioGRID protein-protein interactions: `biogrid.gml.gz `_ - GTEx correlated genes: `corr.gml.gz `_ Function embeddings ------------------- Below is the functional gene embedding obtained by LSI on their GO annotations: - `gene2gos_lsi.csv.gz `_ Cytoscape template ------------------ A template for visualizing inferred graphs in Cytoscape: - `template.cys `_