cascade.utils.hclust

cascade.utils.hclust(X, metric='euclidean', method='complete', cut=True, **kwargs)

Hierarchical clustering followed by optional tree cutting

Parameters:

• X (DataFrame) – Input data

• metric (str) – Distance metric

• method (str) – Clustering method

• cut (bool) – Whether to cut the tree

• **kwargs – Additional keyword arguments for tree cutting passed to cutreeHybrid()

Return type:

tuple[ndarray, Series]

Returns:

• Linkage matrix

• Cluster labels