cascade.model.CASCADE.diagnose

CASCADE.diagnose(adata, batch_size=128, n_devices=1)[source]

Model diagnosis

Parameters:

  • adata (AnnData) – Input dataset

  • batch_size (int) – Batch size

  • n_devices (int) – Number of GPU devices to use

Return type:

AnnData

Returns:

Dataset with the following diagnostic information –

  • obsm["Z_mean_diag"]: Latent mean

  • obsm["Z_std_diag"]: Latent standard deviation

  • layers["X_mean_diag"]: Reconstructed mean

  • layers["X_std_diag"]: Reconstructed standard deviation

  • layers["X_disp_diag"]: Dispersion parameter