Resources

We provide the following resources for download:

Single-cell data

A list of example single-cell perturbation datasets:

• Norman-2019.h5ad

• Check back for more

Scaffold graphs

A list of pre-built human gene scaffold graphs:

• KEGG pathways: inferred_kegg_gene_only.gml.gz

• TF-target predictions: TF-targets.gml.gz

• BioGRID protein-protein interactions: biogrid.gml.gz

• GTEx correlated genes: corr.gml.gz

Function embeddings

Below is the functional gene embedding obtained by LSI on their GO annotations:

• gene2gos_lsi.csv.gz

Cytoscape template

A template for visualizing inferred graphs in Cytoscape:

• template.cys