cascade.sim.simulate_counterfactual

cascade.sim.simulate_counterfactual(adata, scale)[source]

Simulate counterfactual outcome of alternative interventions based on an existing simulated dataset

Parameters:

adata (AnnData) – An existing simulated dataset
scale (Buffer | _SupportsArray[dtype[Any]] | _NestedSequence[_SupportsArray[dtype[Any]]] | bool | int | float | complex | str | bytes | _NestedSequence[bool | int | float | complex | str | bytes]) – Counterfactual interventional scale matrix (same shape as adata)

Return type:

AnnData

Returns:

Counterfactual dataset