cascade.graph.prep_cytoscape

cascade.graph.prep_cytoscape(annotated, scaffold, perts, leaves)

Prepare a graph for visualization in Cytoscape

Parameters:

• annotated (DiGraph) – Annotated causal graph (from annotate_explanation())

• scaffold (DiGraph) – Scaffold graph (from export_causal_graph())

• perts (list[str]) – List of perturbed nodes

• leaves (list[str]) – List of leaf nodes to explain

Return type:

DiGraph

Returns:

Cytoscape-ready graph

Tip

Please visit TODO to obtain a template Cytoscape file containing corresponding styles.